Environmental DNA (eDNA) data from the CCGS Sir John Franklin, NOAA Bell M. Shimada and R/V TINRO during the 2022 International Year of the Salmon Pan-Pacific Winter High Seas Expedition
Amplicon sequence variant (asv) dataset from multi amplicon metabarcoding environmental DNA analysis from the International Year of the Salmon Signature expedition to the Northeast Pacific in Feb/Mar 2022. A table of all asv generated in the study is provided in ASV.csv, broken down by amplicon and sample and listing the occurance of said asv in said sample. Further, total reads per amplicon/sample bin are recorded as well as a taxonomic assignment. Note that this data is provided prior to filtering, e.g. "Homo sapiens" reads are abundant and should be considered contamination. The metadata to sampling stations is provided in the sample_metadata.csv which contains the date, lat/long, as well as detailed environmental metadata associated with the sample. Refer to Deeg et al. "Spatiotemporal patterns of salmon winter habitat usage in the Northeast Pacific uncovered by environmental DNA" ICES Journal of Marine Science 2025 (https://doi.org/10.1093/icesjms/fsaf104) for detailed information on sample collection, sequencing and bioinformatic processing.
Data and resources
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Dataset from multi amplicon metabarcoding environmental DNA analysis from the 2022 IYS High Seas ExpeditionZIP Open
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Link to the dataset as originally published on DryadHTML Open
Additional information
| DOI | https://doi.org/10.5061/dryad.c2fqz61nn |
|---|---|
| Temporal extent | 2022-02-05 – 2022-03-20 |
| Vertical extent | 2.0 – 3.0 m |
| Date (creation) | 2022-02-05 |
| Status | completed |
| Update frequency | asNeeded |
| Metadata language | en |
| License | CC0 |
| Source metadata | ISO 19115 XML |
| Last updated | 2026-09-16 |
| Created | 2026-09-16 |
| API | package_show |